import re
class CsvDiagError(Exception):
def __init__(self, msg):
self.value = msg
def __str__(self):
return self.value
class CsvLine():
escchar = u"\\"
def __init__(self, line_text):
self.text = line_text
self.delim_counts = {}
self.item_errors = [] # A list of error messages.
def __str__(self):
return u"; ".join([u"Text: <<%s>>" % self.text, \
u"Delimiter counts: <<%s>>" % ", ".join([u"%s: %d" % (k, self.delim_counts[k]) for k in self.delim_counts.keys()]) ])
def count_delim(self, delim):
# If the delimiter is a space, consider multiple spaces to be equivalent
# to a single delimiter, split on the space(s), and consider the delimiter
# count to be one fewer than the items returned.
if delim == u" ":
self.delim_counts[delim] = max(0, len(re.split(r' +', self.text)) - 1)
else:
self.delim_counts[delim] = self.text.count(delim)
def delim_count(self, delim):
return self.delim_counts[delim]
def _well_quoted(self, element, qchar):
# A well-quoted element has either no quotes, a quote on each end and none
# in the middle, or quotes on both ends and every internal quote is either
# doubled or escaped.
# Returns a tuple of three booleans; the first indicates whether the element is
# well-quoted, the second indicates whether the quote character is used
# at all, and the third indicates whether the escape character is used.
if qchar not in element:
return (True, False, False)
if len(element) == 0:
return (True, False, False)
if element[0] == qchar and element[-1] == qchar and qchar not in element[1:-1]:
return (True, True, False)
# The element has quotes; if it doesn't have one on each end, it is not well-quoted.
if not (element[0] == qchar and element[-1] == qchar):
return (False, True, False)
e = element[1:-1]
# If there are no quotes left after removing doubled quotes, this is well-quoted.
if qchar not in e.replace(qchar+qchar, u''):
return (True, True, False)
# if there are no quotes left after removing escaped quotes, this is well-quoted.
if qchar not in e.replace(self.escchar+qchar, u''):
return (True, True, True)
return (False, True, False)
def record_format_error(self, pos_no, errmsg):
self.item_errors.append(u"%s in position %d." % (errmsg, pos_no))
def items(self, delim, qchar):
# Parses the line into a list of items, breaking it at delimiters that are not
# within quoted stretches. (This is a almost CSV parser, for valid delim and qchar,
# except that it does not eliminate quote characters or reduce escaped quotes.)
self.item_errors = []
if qchar is None:
if delim is None:
return self.text
else:
if delim == u" ":
return re.split(r' +', self.text)
else:
return self.text.split(delim)
elements = [] # The list of items on the line that will be returned.
eat_multiple_delims = delim == u" "
# States of the FSM:
# _IN_QUOTED: An opening quote has been seen, but no closing quote encountered.
# Actions / transition:
# quote: save char in escape buffer / _ESCAPED
# esc_char : save char in escape buffer / _ESCAPED
# delimiter: save char in element buffer / _IN_QUOTED
# other: save char in element buffer / _IN_QUOTED
# _ESCAPED: An escape character has been seen while _IN_QUOTED (and is in the escape buffer).
# Actions / transitions
# quote: save escape buffer in element buffer, empty escape buffer,
# save char in element buffer / _IN_QUOTED
# delimiter: save escape buffer in element buffer, empty escape buffer,
# save element buffer, empty element buffer / _BETWEEN
# other: save escape buffer in element buffer, empty escape buffer,
# save char in element buffer / _IN_QUOTED
# _QUOTE_IN_QUOTED: A quote has been seen while _IN_QUOTED (and is in the escape buffer).
# Actions / transitions
# quote: save escape buffer in element buffer, empty escape buffer,
# save char in element buffer / _IN_QUOTED
# delimiter: save escape buffer in element buffer, empty escape buffer,
# save element buffer, empty element buffer / _DELIMITED
# other: save escape buffer in element buffer, empty escape buffer,
# save char in element buffer / _IN_QUOTED
# (An 'other' character in this position represents a bad format:
# a quote not followed by another quote or a delimiter.)
# _IN_UNQUOTED: A non-delimiter, non-quote has been seen.
# Actions / transitions
# quote: save char in element buffer / _IN_UNQUOTED
# (This represents a bad format.)
# delimiter: save element buffer, empty element buffer / _DELIMITED
# other: save char in element buffer / _IN_UNQUOTED
# _BETWEEN: Not in an element, and a delimiter not seen. This is the starting state,
# and the state following a closing quote but before a delimiter is seen.
# Actions / transition:
# quote: save char in element buffer / _IN_QUOTED
# delimiter: save element buffer, empty element buffer / _DELIMITED
# (The element buffer should be empty, representing a null data item.)
# other: save char in element buffer / _IN_UNQUOTED
# _DELIMITED: A delimiter has been seen while not in a quoted item.
# Actions / transition:
# quote: save char in element buffer / _IN_QUOTED
# delimiter: if eat_multiple: no action / _DELIMITED
# if not eat_multiple: save element buffer, empty element buffer / _DELIMITED
# other: save char in element buffer / _IN_UNQUOTED
# At end of line: save escape buffer in element buffer, save element buffer. For a well-formed
# line, these should be empty, but they may not be.
#
# Define the state constants, which will also be used as indexes into an execution vector.
_IN_QUOTED, _ESCAPED, _QUOTE_IN_QUOTED, _IN_UNQUOTED, _BETWEEN, _DELIMITED = range(6)
#
# Because of Python 2.7's scoping rules:
# * The escape buffer and current element are defined as mutable objects that will have their
# first elements modified, rather than as string variables. (Python 2.x does not allow
# modification of a variable in an enclosing scope that is not the global scope, but
# mutable objects like lists can be altered. Another approach would be to implement this
# as a class and use instance variables.)
# * The action functions return the next state rather than assigning it directly to the 'state' variable.
esc_buf = [u'']
current_element = [u'']
def in_quoted():
if c == self.escchar:
esc_buf[0] = c
return _ESCAPED
elif c == qchar:
esc_buf[0] = c
return _QUOTE_IN_QUOTED
else:
current_element[0] += c
return _IN_QUOTED
def escaped():
if c == delim:
current_element[0] += esc_buf[0]
esc_buf[0] = u''
elements.append(current_element[0])
current_element[0] = u''
return _BETWEEN
else:
current_element[0] += esc_buf[0]
esc_buf[0] = u''
current_element[0] += c
return _IN_QUOTED
def quote_in_quoted():
if c == qchar:
current_element[0] += esc_buf[0]
esc_buf[0] = u''
current_element[0] += c
return _IN_QUOTED
elif c == delim:
current_element[0] += esc_buf[0]
esc_buf[0] = u''
elements.append(current_element[0])
current_element[0] = u''
return _DELIMITED
else:
current_element[0] += esc_buf[0]
esc_buf[0] = u''
current_element[0] += c
self.record_format_error(i+1, "Unexpected character following a closing quote")
return _IN_QUOTED
def in_unquoted():
if c == delim:
elements.append(current_element[0])
current_element[0] = u''
return _DELIMITED
else:
current_element[0] += c
return _IN_UNQUOTED
def between():
if c == qchar:
current_element[0] += c
return _IN_QUOTED
elif c == delim:
elements.append(current_element[0])
current_element[0] = u''
return _DELIMITED
else:
current_element[0] += c
return _IN_UNQUOTED
def delimited():
if c == qchar:
current_element[0] += c
return _IN_QUOTED
elif c == delim:
if not eat_multiple_delims:
elements.append(current_element[0])
current_element[0] = u''
return _DELIMITED
else:
current_element[0] += c
return _IN_UNQUOTED
# Functions in the execution vector must be ordered identically to the
# indexes represented by the state constants.
exec_vector = [ in_quoted, escaped, quote_in_quoted, in_unquoted, between, delimited ]
# Set the starting state.
state = _BETWEEN
# Process the line of text.
for i, c in enumerate(self.text):
state = exec_vector[state]()
# Process the end-of-line condition.
if len(esc_buf[0]) > 0:
current_element[0] += esc_buf[0]
if len(current_element[0]) > 0:
elements.append(current_element[0])
return elements
def well_quoted_line(self, delim, qchar):
# Returns a tuple of boolean, int, and boolean, indicating: 1) whether the line is
# well-quoted, 2) the number of elements for which the quote character is used,
# and 3) whether the escape character is used.
wq = [ self._well_quoted(el, qchar) for el in self.items(delim, qchar) ]
return ( all([b[0] for b in wq]), sum([b[1] for b in wq]), any([b[2] for b in wq]) )
def diagnose_delim(linestream, possible_delimiters=None, possible_quotechars=None):
# Returns a tuple consisting of the delimiter, quote character, and escape
# character for quote characters within elements of a line. All may be None.
# If the escape character is not None, it will be u"\".
# Arguments:
# * linestream: An iterable file-like object with a 'next()' method that returns lines of text
# as bytes or unicode.
# * possible_delimiters: A list of single characters that might be used to separate items on
# a line. If not specified, the default consists of tab, comma, semicolon, and vertical rule.
# If a space character is included, multiple space characters will be treated as a single
# delimiter--so it's best if there are no missing values on space-delimited lines, though
# that is not necessarily a fatal flaw unless there is a very high fraction of missing values.
# * possible_quotechars: A list of single characters that might be used to quote items on
# a line. If not specified, the default consists of single and double quotes.
if not possible_delimiters:
possible_delimiters = [ u"\t", u",", u";", u"|"]
if not possible_quotechars:
possible_quotechars = [ u'"', u"'"]
lines = []
for i in range(100):
try:
ln = linestream.next()
except StopIteration:
break
except:
raise
while len(ln) > 0 and ln[-1] in (u"\n", u"\r"):
ln = ln[:-1]
if len(ln) > 0:
lines.append(CsvLine(ln))
if len(lines) == 0:
raise CsvDiagError(u"CSV diagnosis error: no lines read")
for ln in lines:
for d in possible_delimiters:
ln.count_delim(d)
# For each delimiter, find the minimum number of delimiters found on any line, and the number of lines
# with that minimum number
delim_stats = {}
for d in possible_delimiters:
dcounts = [ ln.delim_count(d) for ln in lines ]
min_count = min(dcounts)
delim_stats[d] = (min_count, dcounts.count(min_count))
# Remove delimiters that were never found.
for k in delim_stats.keys():
if delim_stats[k][0] == 0:
del(delim_stats[k])
def all_well_quoted(delim, qchar):
# Returns a tuple of boolean, int, and boolean indicating: 1) whether the line is
# well-quoted, 2) the total number of lines and elements for which the quote character
# is used, and 3) the escape character used.
wq = [ l.well_quoted_line(delim, qchar) for l in lines ]
return ( all([b[0] for b in wq]), sum([b[1] for b in wq]), CsvLine.escchar if any([b[2] for b in wq]) else None )
def eval_quotes(delim):
# Returns a tuple of the form to be returned by 'diagnose_delim()'.
ok_quotes = {}
for q in possible_quotechars:
allwq = all_well_quoted(delim, q)
if allwq[0]:
ok_quotes[q] = (allwq[1], allwq[2])
if len(ok_quotes) == 0:
return (delim, None, None) # No quotes, no escapechar
else:
max_use = max([ v[0] for v in ok_quotes.values() ])
if max_use == 0:
return (delim, None, None)
# If multiple quote characters have the same usage, return (arbitrarily) the first one.
for q in ok_quotes.keys():
if ok_quotes[q][0] == max_use:
return (delim, q, ok_quotes[q][1])
if len(delim_stats) == 0:
# None of the delimiters were found. Some other delimiter may apply,
# or the input may contain a single value on each line.
# Identify possible quote characters.
return eval_quotes(None)
else:
if len(delim_stats) > 1:
# If one of them is a space, prefer the non-space
if u" " in delim_stats.keys():
del(delim_stats[u" "])
if len(delim_stats) == 1:
return eval_quotes(delim_stats.keys()[0])
# Assign weights to the delimiters. The weight is the square of the minimum number of delimiters
# on a line times the number of lines with that delimiter.
delim_wts = {}
for d in delim_stats.keys():
delim_wts[d] = delim_stats[d][0]**2 * delim_stats[d][1]
# Evaluate quote usage for each delimiter, from most heavily weighted to least.
# Return the first good pair where the quote character is used.
delim_order = sorted(delim_wts, key=delim_wts.get, reverse=True)
for d in delim_order:
quote_check = eval_quotes(d)
if quote_check[0] and quote_check[1]:
return quote_check
# There are no delimiters for which quotes are OK.
return (delim_order[0], None, None)
# Should never get here
raise CsvDiagError(u"CSV diagnosis error: an untested set of conditions are present")
Showing posts with label finite state machine. Show all posts
Showing posts with label finite state machine. Show all posts
Sunday, April 12, 2015
An alternate Python CSV sniffer
I recently came across a case where the format sniffer in Python's csv module was not satisfactory. The problem is that the format sniffer always identifies a quote character, even when there is no quote character in the CSV file (e.g., in the case of a tab-delimited file). By default the format sniffer reports that a double-quote character is used. This is not a problem if you subsequently use the csv module itself to read the file. However, I wanted to use the csv module only if the file contained quote characters, and use a different method (the copy_from method of the psycopg module) if the file contained no quote characters. I could not make this distinction using the csv module's format sniffer, so I wrote the following one to use instead.
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